Analysis pipelines
Computational workflows for transcriptomic and related analyses, including space for reusable and project-linked approaches as the repository develops.
Pipelines & Protocols
Reproducible workflows and version-controlled methods
White Lab Neuro is committed to transparent and reproducible research. Our GitHub repository provides a central home for pipelines, workflows and version-controlled protocols developed in the lab.
As the lab grows, the WhiteLabNeuro pipelines-and-protocols repository will provide a clearer record of how analyses were run and how methods evolved across projects. This includes computational workflows, structured documentation and selected experimental protocols linked to specific datasets, projects or manuscripts where appropriate.
Our aim is to support consistency, traceability and open science across the lab’s work, while making it easier for collaborators, trainees and the wider research community to understand and reuse selected resources.
What you will find
Version-controlled protocols
Protocols that can be updated over time, helping track how methods develop as projects mature and new approaches are introduced.
Project-linked resources
Materials associated with specific datasets, figures, manuscripts or collaborative projects where public sharing is appropriate.
Documentation and guidance
README files, versioning notes and practical documentation to make workflows easier to interpret, reproduce and adapt.
Why this matters
Research in White Lab brings together human stem-cell models, molecular neuroscience, transcriptomics and data analysis. As these projects become more complex, clear versioning and well-documented workflows become increasingly important.
Keeping pipelines and protocols in a visible, version-controlled space helps support rigorous research practice within the lab and makes it easier to connect methods to publications, datasets and evolving projects over time.
- Supports reproducibility
- Tracks method development over time
- Links workflows to projects and publications
- Improves internal consistency across the lab
- Helps collaborators and trainees navigate methods
- Contributes to open and transparent science
Growing with the lab
This part of the website will expand over time as White Lab develops new workflows, generates new datasets and builds a stronger collection of reusable resources. At this stage, it points visitors to the lab’s repository as the best place to follow how these materials are being organised and developed.
Explore the repository
Visit the WhiteLabNeuro pipelines-and-protocols repository to view the current structure, documentation and future home of the lab’s workflows and protocols.
Open the repository